| Group A | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | West Ham United | 5 | 4 | 0 | 1 | 8 | 4 | 4 | 12 |
| 2 | Freiburg | 5 | 4 | 0 | 1 | 17 | 5 | 12 | 12 |
| 3 | Olympiacos | 5 | 1 | 1 | 3 | 6 | 12 | -6 | 4 |
| 4 | TSC Backa Topola | 5 | 0 | 1 | 4 | 4 | 14 | -10 | 1 |
| Group B | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Arsenal | 6 | 6 | 0 | 0 | 20 | 5 | 15 | 18 |
| 2 | Molde | 6 | 3 | 1 | 2 | 9 | 11 | -2 | 10 |
| 3 | Rapid Wien | 6 | 2 | 1 | 3 | 11 | 13 | -2 | 7 |
| 4 | Dundalk | 6 | 0 | 0 | 6 | 8 | 19 | -11 | 0 |
| Group C | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Real Betis | 5 | 3 | 0 | 2 | 7 | 4 | 3 | 9 |
| 2 | Rangers | 5 | 2 | 2 | 1 | 5 | 4 | 1 | 8 |
| 3 | Sparta Prague | 5 | 2 | 1 | 2 | 6 | 6 | 0 | 7 |
| 4 | Aris Limassol | 5 | 1 | 1 | 3 | 6 | 10 | -4 | 4 |
| Group D | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Atalanta | 5 | 3 | 2 | 0 | 8 | 4 | 4 | 11 |
| 2 | Sporting CP | 5 | 2 | 2 | 1 | 7 | 6 | 1 | 8 |
| 3 | Sturm Graz | 5 | 1 | 1 | 3 | 4 | 6 | -2 | 4 |
| 4 | Rakow Czestochowa | 5 | 1 | 1 | 3 | 3 | 6 | -3 | 4 |
| Group E | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Liverpool | 5 | 4 | 0 | 1 | 16 | 5 | 11 | 12 |
| 2 | Toulouse | 5 | 2 | 2 | 1 | 6 | 8 | -2 | 8 |
| 3 | Union St.Gilloise | 5 | 1 | 2 | 2 | 3 | 7 | -4 | 5 |
| 4 | LASK | 5 | 1 | 0 | 4 | 5 | 10 | -5 | 3 |
| Group F | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Rennes | 5 | 4 | 0 | 1 | 11 | 3 | 8 | 12 |
| 2 | Villarreal | 5 | 3 | 1 | 1 | 6 | 5 | 1 | 10 |
| 3 | Panathinaikos | 5 | 1 | 1 | 3 | 6 | 8 | -2 | 4 |
| 4 | Maccabi Haifa | 5 | 0 | 2 | 3 | 1 | 8 | -7 | 2 |
| Group G | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Slavia Prague | 5 | 4 | 0 | 1 | 13 | 4 | 9 | 12 |
| 2 | Roma | 5 | 3 | 1 | 1 | 9 | 4 | 5 | 10 |
| 3 | Servette | 5 | 1 | 2 | 2 | 4 | 9 | -5 | 5 |
| 4 | FC Sheriff | 5 | 0 | 1 | 4 | 5 | 14 | -9 | 1 |
| Group H | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Bayer Leverkusen | 5 | 5 | 0 | 0 | 14 | 2 | 12 | 15 |
| 2 | Qarabag FK | 5 | 2 | 1 | 2 | 5 | 8 | -3 | 7 |
| 3 | Molde | 5 | 2 | 1 | 2 | 11 | 7 | 4 | 7 |
| 4 | BK Haecken | 5 | 0 | 0 | 5 | 2 | 15 | -13 | 0 |
| Group I | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Villarreal | 6 | 5 | 1 | 0 | 17 | 5 | 12 | 16 |
| 2 | Maccabi Tel Aviv | 6 | 3 | 2 | 1 | 6 | 7 | -1 | 11 |
| 3 | Sivasspor | 6 | 2 | 0 | 4 | 9 | 11 | -2 | 6 |
| 4 | Qarabag FK | 6 | 0 | 1 | 5 | 4 | 13 | -9 | 1 |
| Group J | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Tottenham Hotspur | 6 | 4 | 1 | 1 | 15 | 5 | 10 | 13 |
| 2 | Royal Antwerp | 6 | 4 | 0 | 2 | 8 | 5 | 3 | 12 |
| 3 | LASK | 6 | 3 | 1 | 2 | 11 | 12 | -1 | 10 |
| 4 | Ludogorets Razgrad | 6 | 0 | 0 | 6 | 7 | 19 | -12 | 0 |
| Group K | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Dinamo Zagreb | 6 | 4 | 2 | 0 | 9 | 1 | 8 | 14 |
| 2 | Wolfsberger AC | 6 | 3 | 1 | 2 | 7 | 6 | 1 | 10 |
| 3 | Feyenoord | 6 | 1 | 2 | 3 | 4 | 8 | -4 | 5 |
| 4 | CSKA Moscow | 6 | 0 | 3 | 3 | 3 | 8 | -5 | 3 |
| Group L | Games | Win | Draw | Loss | Balls | Diff. | Points | ||
| 1 | Hoffenheim | 6 | 5 | 1 | 0 | 17 | 2 | 15 | 16 |
| 2 | FK Crvena Zvezda | 6 | 3 | 2 | 1 | 9 | 4 | 5 | 11 |
| 3 | Slovan Liberec | 6 | 2 | 1 | 3 | 4 | 13 | -9 | 7 |
| 4 | Gent | 6 | 0 | 0 | 6 | 4 | 15 | -11 | 0 |